PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000018.1_g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 197aa    MW: 22600.1 Da    PI: 4.8285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000018.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.39e-3891291128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r +        +r+t++g+Wk  
  Itr_sc000018.1_g00020.1   9 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGRKWYFYSRRTS--------RRMTENGFWKPL 85 
                              79*************************999.99**************977778899******9854........789********* PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g +++++s+   g++vg+kk  +fy g+ p+g ktdWvm+eyrl
  Itr_sc000018.1_g00020.1  86 GVEEPIFSSsgAGQKVGMKKYYAFYVGEPPEGDKTDWVMQEYRL 129
                              ********9888899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-476161IPR003441NAC domain
PROSITE profilePS5100546.2799163IPR003441NAC domain
PfamPF023652.7E-2210129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGDNNNVNLP PGFRFYPTDE ELVVHFLHRK AALLPCHPDV IPDLDLYPYD PWDLDGKAMA  60
EGRKWYFYSR RTSRRMTENG FWKPLGVEEP IFSSSGAGQK VGMKKYYAFY VGEPPEGDKT  120
DWVMQEYRLS DYSASTSSRS SSRRNRHSKI DYSKWVICRV FEGNYDNGGG GDDGTELSCL  180
DEVFLSLDDL DEISLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B8e-40516213164NAC domain-containing protein 19
4dul_A8e-40516213164NAC domain-containing protein 19
1ut7_B8e-40516213164NO APICAL MERISTEM PROTEIN
1ut7_A8e-40516213164NO APICAL MERISTEM PROTEIN
1ut4_B8e-40516213164NO APICAL MERISTEM PROTEIN
1ut4_A8e-40516213164NO APICAL MERISTEM PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762857.11e-100PREDICTED: NAC transcription factor 25 isoform X1
RefseqXP_016458989.11e-100PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK61e-82NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A068TMB62e-97A0A068TMB6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000764814e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-65xylem NAC domain 1